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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("SemDist")
In most cases, you don't need to download the package archive at all.
SemDist
Information Accretion-based Function Predictor Evaluation
Bioconductor version: 3.1
This package implements methods to calculate information accretion for a given version of the gene ontology and uses this data to calculate remaining uncertainty, misinformation, and semantic similarity for given sets of predicted annotations and true annotations from a protein function predictor.
Author: Ian Gonzalez and Wyatt Clark
Maintainer: Ian Gonzalez <gonzalez.isv at gmail.com>
Citation (from within R,
enter citation("SemDist")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("SemDist")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SemDist")
| R Script | introduction.pdf | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, Classification, GO, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1 year) |
| License | GPL (>= 2) |
| Depends | R (>= 3.1), AnnotationDbi, GO.db, annotate |
| Imports | |
| LinkingTo | |
| Suggests | GOSemSim |
| SystemRequirements | |
| Enhances | |
| URL | http://github.com/iangonzalez/SemDist |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | SemDist_1.2.0.tar.gz |
| Windows Binary | SemDist_1.2.0.zip |
| Mac OS X 10.6 (Snow Leopard) | SemDist_1.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | SemDist_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/SemDist/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/SemDist/ |
| Package Downloads Report | Download Stats |
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