- Home
- Bioconductor 3.1
- Software Packages
- RDRToolbox
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")
In most cases, you don't need to download the package archive at all.
RDRToolbox
A package for nonlinear dimension reduction with Isomap and LLE.
Bioconductor version: 3.1
A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.
Author: Christoph Bartenhagen
Maintainer: Christoph Bartenhagen <christoph.bartenhagen at ukmuenster.de>
Citation (from within R,
enter citation("RDRToolbox")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RDRToolbox")
| R Script | A package for nonlinear dimension reduction with Isomap and LLE. | |
| Reference Manual |
Details
| biocViews | Clustering, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization |
| Version | 1.18.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.9.0) |
| Imports | graphics, grDevices, methods, stats, MASS, rgl |
| LinkingTo | |
| Suggests | golubEsets |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RDRToolbox_1.18.0.tar.gz |
| Windows Binary | RDRToolbox_1.18.0.zip |
| Mac OS X 10.6 (Snow Leopard) | RDRToolbox_1.18.0.tgz |
| Mac OS X 10.9 (Mavericks) | RDRToolbox_1.18.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/RDRToolbox/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/RDRToolbox/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
