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- RDAVIDWebService
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("RDAVIDWebService")
In most cases, you don't need to download the package archive at all.
RDAVIDWebService
An R Package for retrieving data from DAVID into R objects using Web Services API.
Bioconductor version: 3.1
Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table
Author: Cristobal Fresno and Elmer A. Fernandez
Maintainer: Cristobal Fresno <cfresno at bdmg.com.ar>
Citation (from within R,
enter citation("RDAVIDWebService")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("RDAVIDWebService")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RDAVIDWebService")
| R Script | RDAVIDWebService: a versatile R interface to DAVID | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, GraphAndNetwork, Software, Visualization |
| Version | 1.6.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (2 years) |
| License | GPL (>=2) |
| Depends | R (>= 2.14.1), methods, graph, GOstats, ggplot2 |
| Imports | Category, GO.db, RBGL, rJava |
| LinkingTo | |
| Suggests | Rgraphviz |
| SystemRequirements | |
| Enhances | |
| URL | http://www.bdmg.com.ar http://david.abcc.ncifcrf.gov/ |
| Depends On Me | CompGO |
| Imports Me | |
| Suggests Me | clusterProfiler, FGNet |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RDAVIDWebService_1.6.0.tar.gz |
| Windows Binary | RDAVIDWebService_1.6.0.zip |
| Mac OS X 10.6 (Snow Leopard) | RDAVIDWebService_1.6.0.tgz |
| Mac OS X 10.9 (Mavericks) | RDAVIDWebService_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/RDAVIDWebService/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/RDAVIDWebService/ |
| Package Downloads Report | Download Stats |
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