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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("OrderedList")
In most cases, you don't need to download the package archive at all.
OrderedList
Similarities of Ordered Gene Lists
Bioconductor version: 3.1
Detection of similarities between ordered lists of genes. Thereby, either simple lists can be compared or gene expression data can be used to deduce the lists. Significance of similarities is evaluated by shuffling lists or by resampling in microarray data, respectively.
Author: Xinan Yang, Stefanie Scheid, Claudio Lottaz
Maintainer: Claudio Lottaz <Claudio.Lottaz at klinik.uni-regensburg.de>
Citation (from within R,
enter citation("OrderedList")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("OrderedList")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OrderedList")
| R Script | Similarities of Ordered Gene Lists | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, MultipleComparison, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (9.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.1.0), Biobase(>= 1.5.12), twilight(>= 1.9.2), methods |
| Imports | Biobase, graphics, methods, stats, twilight |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://compdiag.molgen.mpg.de/software/index.shtml |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | OrderedList_1.40.0.tar.gz |
| Windows Binary | OrderedList_1.40.0.zip |
| Mac OS X 10.6 (Snow Leopard) | OrderedList_1.40.0.tgz |
| Mac OS X 10.9 (Mavericks) | OrderedList_1.40.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/OrderedList/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/OrderedList/ |
| Package Downloads Report | Download Stats |
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