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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("OmicsMarkeR")
In most cases, you don't need to download the package archive at all.
OmicsMarkeR
Classification and Feature Selection for 'Omics' Datasets
Bioconductor version: 3.1
Tools for classification and feature selection for 'omics' level datasets. It is a tool to provide multiple multivariate classification and feature selection techniques complete with multiple stability metrics and aggregation techniques. It is primarily designed for analysis of metabolomics datasets but potentially extendable to proteomics and transcriptomics applications.
Author: Charles E. Determan Jr. <cdetermanjr at gmail.com>
Maintainer: Charles E. Determan Jr. <cdetermanjr at gmail.com>
Citation (from within R,
enter citation("OmicsMarkeR")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("OmicsMarkeR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OmicsMarkeR")
| R Script | A Short Introduction to the OmicMarkeR Package | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Classification, FeatureExtraction, Metabolomics, Software |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.1 (R-3.2) (< 6 months) |
| License | GPL-3 |
| Depends | R (>= 3.2.0) |
| Imports | plyr (>= 1.8), data.table (>= 1.9.4), caret (>= 6.0-37), DiscriMiner (>= 0.1-29), e1071 (>= 1.6-1), randomForest (>= 4.6-10), gbm (>= 2.1), pamr (>= 1.54.1), glmnet (>= 1.9-5), caTools (>= 1.14), foreach (>= 1.4.1), permute (>= 0.7-0), assertive (>= 0.3-0), assertive.base (>= 0.0-1) |
| LinkingTo | |
| Suggests | testthat, BiocStyle, knitr |
| SystemRequirements | |
| Enhances | |
| URL | http://github.com/cdeterman/OmicsMarkeR |
| BugReports | http://github.com/cdeterman/OmicsMarkeR/issues/new |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | OmicsMarkeR_1.0.1.tar.gz |
| Windows Binary | OmicsMarkeR_1.0.1.zip |
| Mac OS X 10.6 (Snow Leopard) | OmicsMarkeR_1.0.1.tgz |
| Mac OS X 10.9 (Mavericks) | OmicsMarkeR_1.0.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/OmicsMarkeR/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/OmicsMarkeR/ |
| Package Downloads Report | Download Stats |
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