To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("NetSAM")
In most cases, you don't need to download the package archive at all.
NetSAM
Network Seriation And Modularization
Bioconductor version: 3.1
The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.
Author: Jing Wang <jing.wang.2 at vanderbilt.edu>
Maintainer: Bing Zhang <bing.zhang at vanderbilt.edu>
Citation (from within R,
enter citation("NetSAM")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("NetSAM")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NetSAM")
| R Script | NetSAM | |
| Reference Manual |
Details
| biocViews | Network, Software, Visualization |
| Version | 1.8.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (2 years) |
| License | LGPL |
| Depends | R (>= 2.15.1), methods, igraph (>= 0.6-1), seriation (>= 1.0-6), graph(>= 1.34.0) |
| Imports | methods |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | NetSAM_1.8.0.tar.gz |
| Windows Binary | NetSAM_1.8.0.zip |
| Mac OS X 10.6 (Snow Leopard) | NetSAM_1.8.0.tgz |
| Mac OS X 10.9 (Mavericks) | NetSAM_1.8.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/NetSAM/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/NetSAM/ |
| Package Downloads Report | Download Stats |
Documentation »
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