- Home
- Bioconductor 3.1
- Software Packages
- KEGGREST
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("KEGGREST")
In most cases, you don't need to download the package archive at all.
KEGGREST
Client-side REST access to KEGG
Bioconductor version: 3.1
A package that provides a client interface to the KEGG REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.
Author: Dan Tenenbaum
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("KEGGREST")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("KEGGREST")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("KEGGREST")
| HTML | R Script | Accessing the KEGG REST API |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, KEGG, Pathways, Software, ThirdPartyClient |
| Version | 1.8.1 |
| In Bioconductor since | BioC 2.12 (R-3.0) (2.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | methods, httr, png, Biostrings |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics, knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | Hiiragi2013, PAPi, ROntoTools |
| Imports Me | clusterProfiler, EnrichmentBrowser, gage, KEGGprofile, mmnet, pathview, RnaSeqSampleSize |
| Suggests Me | limma |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | KEGGREST_1.8.1.tar.gz |
| Windows Binary | KEGGREST_1.8.1.zip |
| Mac OS X 10.6 (Snow Leopard) | KEGGREST_1.8.1.tgz |
| Mac OS X 10.9 (Mavericks) | KEGGREST_1.8.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/KEGGREST/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/KEGGREST/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
