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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("FISHalyseR")
In most cases, you don't need to download the package archive at all.
FISHalyseR
FISHalyseR a package for automated FISH quantification
Bioconductor version: 3.1
FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.
Author: Karesh Arunakirinathan <akaresh88 at gmail.com>, Andreas Heindl <andreas.heindl at icr.ac.uk>
Maintainer: Karesh Arunakirinathan <akaresh88 at gmail.com>, Andreas Heindl <andreas.heindl at icr.ac.uk>
Citation (from within R,
enter citation("FISHalyseR")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("FISHalyseR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FISHalyseR")
| R Script | FISHAlyseR Automated fluorescence in situ hybridisation quantification in R | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | CellBiology, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (< 6 months) |
| License | Artistic-2.0 |
| Depends | EBImage, abind |
| Imports | |
| LinkingTo | |
| Suggests | knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | FISHalyseR_1.2.0.tar.gz |
| Windows Binary | FISHalyseR_1.2.0.zip |
| Mac OS X 10.6 (Snow Leopard) | FISHalyseR_1.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | FISHalyseR_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/FISHalyseR/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/FISHalyseR/ |
| Package Downloads Report | Download Stats |
Documentation »
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