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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("ENCODExplorer")
In most cases, you don't need to download the package archive at all.
ENCODExplorer
A compilation of ENCODE metadata
Bioconductor version: 3.1
This package allows user to quickly access ENCODE project files metadata and give access to helper functions to query the ENCODE rest api, download ENCODE datasets and save the database in SQLite format.
Author: Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>, Audrey Lemacon <lemacon.audrey at ulaval.ca> and Arnaud Droit <arnaud.droit at crchudequebec.ulaval.ca >
Maintainer: Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>
Citation (from within R,
enter citation("ENCODExplorer")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("ENCODExplorer")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ENCODExplorer")
| HTML | R Script | Data update |
| HTML | R Script | Database model |
| HTML | R Script | Introduction to ENCODExplorer |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, Infrastructure, Software |
| Version | 1.0.6 |
| In Bioconductor since | BioC 3.1 (R-3.2) (< 6 months) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2) |
| Imports | tools, jsonlite, RSQLite |
| LinkingTo | |
| Suggests | RUnit, BiocGenerics, knitr, curl, httr |
| SystemRequirements | |
| Enhances | |
| URL | |
| BugReports | https://github.com/CharlesJB/ENCODExplorer/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ENCODExplorer_1.0.6.tar.gz |
| Windows Binary | ENCODExplorer_1.0.6.zip |
| Mac OS X 10.6 (Snow Leopard) | ENCODExplorer_1.0.6.tgz |
| Mac OS X 10.9 (Mavericks) | ENCODExplorer_1.0.6.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ENCODExplorer/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/ENCODExplorer/ |
| Package Downloads Report | Download Stats |
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