- Home
- Bioconductor 3.1
- Software Packages
- AffyRNADegradation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("AffyRNADegradation")
In most cases, you don't need to download the package archive at all.
AffyRNADegradation
Analyze and correct probe positional bias in microarray data due to RNA degradation
Bioconductor version: 3.1
The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.
Author: Mario Fasold
Maintainer: Mario Fasold <fasold at izbi.uni-leipzig.de>
Citation (from within R,
enter citation("AffyRNADegradation")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("AffyRNADegradation")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AffyRNADegradation")
| R Script | AffyRNADegradation Example | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software |
| Version | 1.14.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (3.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.9.0), methods, affy |
| Imports | |
| LinkingTo | |
| Suggests | AmpAffyExample |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | AffyRNADegradation_1.14.0.tar.gz |
| Windows Binary | AffyRNADegradation_1.14.0.zip |
| Mac OS X 10.6 (Snow Leopard) | AffyRNADegradation_1.14.0.tgz |
| Mac OS X 10.9 (Mavericks) | AffyRNADegradation_1.14.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/AffyRNADegradation/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/AffyRNADegradation/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
