Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm.


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Documentation for package ‘switchBox’ version 1.2.0

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switchBox-package A package to train and apply K-Top-Scoring-Pair (KTSP) classifiers.
KTSP.Classify Function to classify samples using a KTSP classifier.
KTSP.Train Funtion for training the K-TSP classifier.
matTesting Gene expression matrix for test set data
matTraining Gene expression matrix for training set data
SWAP.CalculateSignedScore Function to calculate the pair-wise scores.
SWAP.Filter.Wilcoxon Statistical feature filtering based on Wilcoxon test on the ranks of expressions.
SWAP.KTSP.Classify Function to classify samples using a KTSP classifier.
SWAP.KTSP.Statistics Function computing TSP votes (comparisons) and combine their votes. The default is the kTSP statistics, sum of the votes.
SWAP.KTSP.Train Function for training the K-TSP classifier.
switchBox A package to train and apply K-Top-Scoring-Pair (KTSP) classifiers.
testingGroup Testing set phenotypes
trainingGroup Training set phenotypes