ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.


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Documentation for package ‘ncdfFlow’ version 2.14.2

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ncdfFlow-package ncdfFlow: A package that provides CDF storage based flow cytometry data analysis.
as.flowSet convert from a 'ncdfFlowSet' to a 'flowSet'
clone.ncdfFlowSet Clone a ncdfFlowSet
colnames-method Accessors compatible with those for 'flowSet'
colnames<- Accessors compatible with those for 'flowSet'
colnames<--method Accessors compatible with those for 'flowSet'
compensate-method Accessors compatible with those for 'flowSet'
densityplot-method flowViz plot methods.
filter-method Accessors compatible with those for 'flowSet'
getFileName get the cdf file name associated with ncdfFlowSet object
getIndices 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
getIndices-method 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
initIndices 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
initIndices-method 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
lapply-method lapply method for ncdfFlowList
length-method Accessors compatible with those for 'flowSet'
load_ncfs save/load a ncdfFlowSet object to/from disk.
ncdfFlow ncdfFlow: A package that provides CDF storage based flow cytometry data analysis.
ncdfFlowList a class that stores multiple ncdfFlowSet objects
ncdfFlowList-class a class that stores multiple ncdfFlowSet objects
ncdfFlowSet create ncdfFlowSet from flowSet
ncdfFlowSet-class a class for storing flow cytometry raw data in HDF5 format
ncdfFlowSet-method create ncdfFlowSet from flowSet
ncfsApply apply method for ncdfFlowSet (for internal use)
ncfsApply-method apply method for ncdfFlowSet (for internal use)
pData-method Accessors compatible with those for 'flowSet'
pData<--method Accessors compatible with those for 'flowSet'
phenoData-method Accessors compatible with those for 'flowSet'
phenoData<--method Accessors compatible with those for 'flowSet'
rbind2-method combine multiple ncdfFlowSet objects into one
read.ncdfFlowSet create ncdfFlowSet from FCS files
read.ncdfFlowset create ncdfFlowSet from FCS files
replacement method for ncdfFlowSet write the flow data from a 'flowFrame' to 'ncdfFlowSet'
sampleNames-method Accessors compatible with those for 'flowSet'
sampleNames<- Accessors compatible with those for 'flowSet'
sampleNames<--method Accessors compatible with those for 'flowSet'
save_ncfs save/load a ncdfFlowSet object to/from disk.
show a class for storing flow cytometry raw data in HDF5 format
show-method a class that stores multiple ncdfFlowSet objects
show-method a class for storing flow cytometry raw data in HDF5 format
split-method split a 'ncdfFlowSet' object.
Subset-method subset a ncdfFlowSet by filter
subset.ncdfFlowList subset the ncdfFlowSet/ncdfFlowList based on 'pData'
subset.ncdfFlowSet subset the ncdfFlowSet/ncdfFlowList based on 'pData'
transform-method Accessors compatible with those for 'flowSet'
unlink-method delete the cdf file associated with the ncdfFlowSet object
updateIndices 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
updateIndices-method 'getIndices' extracts the event indices of one or multiple samples from ncdfFlowSet
xyplot-method flowViz plot methods.
[-method subsetting by sampleNames,channels(not for events) methods
[[-method extract a 'flowFrame' object from 'ncdfFlowSet'
[[<--method write the flow data from a 'flowFrame' to 'ncdfFlowSet'