LC-MS/MS Differential Expression Tests


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Documentation for package ‘msmsTests’ version 1.6.0

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msmsTests-package LC-MS/MS Differential Expression Tests
msms.edgeR Spectral counts differential expression by edgeR
msms.glm.pois Spectral counts differential expression by Poisson GLM
msms.glm.qlll Spectral counts differential expression by quasi-likelihood GLM
msms.spk Yeast lisate samples spiked with human proteins
msmsTests LC-MS/MS Differential Expression Tests
pval.by.fc Table of cumulative frequencies of p-values by log fold change bins
res.volcanoplot Volcanoplot
test.results Multitest p-value adjustment and post-test filter