gwascat-package |
representing and modeling data in the NHGRI GWAS catalog |
bindcadd_snv |
bind CADD scores of Kircher et al. 2014 to a GRanges instance |
chklocs |
operations on GWAS catalog |
DataFrame |
representing and modeling data in the NHGRI GWAS catalog |
g17SM |
representing and modeling data in the NHGRI GWAS catalog |
getRsids |
Class '"gwaswloc"' |
getRsids-method |
Class '"gwaswloc"' |
getTraits |
Class '"gwaswloc"' |
getTraits-method |
Class '"gwaswloc"' |
gg17N |
representing and modeling data in the NHGRI GWAS catalog |
gw6.rs_17 |
representing and modeling data in the NHGRI GWAS catalog |
gwascat |
representing and modeling data in the NHGRI GWAS catalog |
gwastagger |
data on 1000 genomes SNPs that 'tag' GWAS catalog entries |
gwaswloc-class |
Class '"gwaswloc"' |
gwcex2gviz |
Prepare salient components of GWAS catalog for rendering with Gviz |
gwdf_2014_09_08 |
internal data frame for NHGRI GWAS catalog |
gwrngs19 |
representing and modeling data in the NHGRI GWAS catalog |
gwrngs38 |
representing and modeling data in the NHGRI GWAS catalog |
impute.snps |
representing and modeling data in the NHGRI GWAS catalog |
ldtagr |
expand a list of variants by including those in a VCF with LD exceeding some threshold |
locon6 |
location information for 10000 SNPs probed on Affy GW 6.0 |
locs4trait |
operations on GWAS catalog |
low17 |
representing and modeling data in the NHGRI GWAS catalog |
makeCurrentGwascat |
read NHGRI GWAS catalog table and construct associated GRanges instance |
obo2graphNEL |
convert a typical OBO text file to a graphNEL instance (using Term elements) |
riskyAlleleCount |
given a matrix of subjects x SNP calls, count number of risky alleles |
rules_6.0_1kg_17 |
representing and modeling data in the NHGRI GWAS catalog |
show-method |
Class '"gwaswloc"' |
si.hs.38 |
representing and modeling data in the NHGRI GWAS catalog |
SnpMatrix-class |
representing and modeling data in the NHGRI GWAS catalog |
subsetByChromosome |
Class '"gwaswloc"' |
subsetByChromosome-method |
Class '"gwaswloc"' |
subsetByTraits |
Class '"gwaswloc"' |
subsetByTraits-method |
Class '"gwaswloc"' |
topTraits |
operations on GWAS catalog |
traitsManh |
use ggbio facilities to display GWAS results for selected traits in genomic coordinates |
[-method |
Class '"gwaswloc"' |