Dual KS Discriminant Analysis and Classification


[Up] [Top]

Documentation for package ‘dualKS’ version 1.28.0

Help Pages

dualKS-package Dual KS Discriminant Analysis and Classification
class:DKSClassifier Class to contain gene set signatures.
class:DKSGeneScores Class to contain dual Kolmogorov Smirnov rank sum discriminant analysis results for gene expression data.
class:DKSGeneSet Class to contain gene signatures.
class:DKSPredicted Class to contain classification results from dksClassify
dks A demonstration data set for package dualKS.
DKSClassifier Class to contain gene set signatures.
DKSClassifier-class Class to contain gene set signatures.
dksClassify Predict classes for gene expression sets.
dksCustomClass Create a classification object from predefined gene signature.
DKSGeneScores Class to contain dual Kolmogorov Smirnov rank sum discriminant analysis results for gene expression data.
DKSGeneScores-class Class to contain dual Kolmogorov Smirnov rank sum discriminant analysis results for gene expression data.
DKSGeneSet Class to contain gene signatures.
DKSGeneSet-class Class to contain gene signatures.
dksPerm Estimate significance of signature scores.
DKSPredicted Class to contain classification results from dksClassify
DKSPredicted-class Class to contain classification results from dksClassify
dksSelectGenes Extract gene signatures from a DKSGeneScores object.
dksTrain Perform Dual KS Discriminant Analysis
dksWeights Calculate gene weights based on average expression.
dualKS Dual KS Discriminant Analysis and Classification
eset A demonstration data set for package dualKS.
KS Calculate Kolmogorov Smirnov rank sum scores.
plot-method Class to contain classification results from dksClassify
pv.f A demonstration data set for package dualKS.
pvr.f A demonstration data set for package dualKS.
show-method Class to contain classification results from dksClassify
summary-method Class to contain classification results from dksClassify