UNDO-package | Implementation of UNDO (unsupervised deconvolution of tumor-stromal mixed expressions) |
BiologicalMixMCF7HS27 | MCF7 and HS27 biologically mixed |
calc_E1 | function calculating the E1 measurement |
dimension_reduction | Dimension reduction function |
gene_expression_input | Detect whether the input gene expression data are valid |
marker_gene_selection | Select marker genes in two sources |
mixing_matrix_computation | Calculate and scale the mixing matrix |
NumericalMixingMatrix | mixing matrix of data NumericalMixMCF7HS27 |
NumericalMixMCF7HS27 | MCF7 and HS27 numerically mixed |
PureMCF7HS27 | pure MCF7 and HS27 |
two_source_deconv | Main function to call other subfunction to deconvolute the mixed expression data. |
UNDO | Implementation of UNDO (unsupervised deconvolution of tumor-stromal mixed expressions) |