Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions


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Documentation for package ‘UNDO’ version 1.10.0

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UNDO-package Implementation of UNDO (unsupervised deconvolution of tumor-stromal mixed expressions)
BiologicalMixMCF7HS27 MCF7 and HS27 biologically mixed
calc_E1 function calculating the E1 measurement
dimension_reduction Dimension reduction function
gene_expression_input Detect whether the input gene expression data are valid
marker_gene_selection Select marker genes in two sources
mixing_matrix_computation Calculate and scale the mixing matrix
NumericalMixingMatrix mixing matrix of data NumericalMixMCF7HS27
NumericalMixMCF7HS27 MCF7 and HS27 numerically mixed
PureMCF7HS27 pure MCF7 and HS27
two_source_deconv Main function to call other subfunction to deconvolute the mixed expression data.
UNDO Implementation of UNDO (unsupervised deconvolution of tumor-stromal mixed expressions)