confidence | provides various kinds of confidence measures for an inferred progression model |
confidence.conditional | provides various kinds of confidence measures for an inferred progression model |
confidence.data.conditional | provides various kinds of confidence measures for an inferred progression model |
confidence.data.joint | provides various kinds of confidence measures for an inferred progression model |
confidence.data.single | provides various kinds of confidence measures for an inferred progression model |
confidence.fit.conditional | provides various kinds of confidence measures for an inferred progression model |
confidence.fit.joint | provides various kinds of confidence measures for an inferred progression model |
confidence.fit.single | provides various kinds of confidence measures for an inferred progression model |
confidence.joint | provides various kinds of confidence measures for an inferred progression model |
confidence.single | provides various kinds of confidence measures for an inferred progression model |
data.load | load a dataset (binary matrix) from a file or a preloaded dataset. |
events | Events collection for Ovarian cancer CGH data |
events.add | add a new event (e.g., a missense point mutation for EGFR) |
events.load | load a set of events from file |
ov.cgh | Ovarian cancer CGH data |
reset | reset |
reset.events | reset |
reset.types | reset |
tronco.bootstrap | perform bootstrap algorithm |
tronco.bootstrap.show | show bootstrapping results |
tronco.caprese | runs CAPRESE algorithm |
tronco.plot | plot a progression model |
types | Types collection for Ovarian cancer CGH data |
types.add | add a new type of event (e.g., missense point mutation) |
types.load | load a set of types from file |