bottomly |
Some existing RNA-seq and gene expression microarray data |
cheung |
Some existing RNA-seq and gene expression microarray data |
comparePower |
Compute the power-related quantities from simulation results |
GE.human |
Some existing RNA-seq and gene expression microarray data |
gilad |
Some existing RNA-seq and gene expression microarray data |
maqc |
Some existing RNA-seq and gene expression microarray data |
param |
Some existing RNA-seq and gene expression microarray data |
pbmc |
Some existing RNA-seq and gene expression microarray data |
plotAll |
Plot the stratified curves for power-related quantities |
plotFDcost |
Plot the stratified curves for power-related quantities |
plotFDR |
Plot the stratified curves for power-related quantities |
plotPower |
Plot the stratified curves for power-related quantities |
plotPowerAlpha |
Plot the stratified curves for power-related quantities |
plotPowerFD |
Plot the stratified curves for power-related quantities |
plotPowerHist |
Plot the histogram of power |
plotPowerTD |
Plot the stratified curves for power-related quantities |
power.seqDepth |
Estimate the marginal power under different sequencing depth |
RNAseq.SimOptions.2grp |
Set up options for simulating RNA-seq data in two-group comparison. |
runSims |
Run a number of RNA-seq simulations and DE detections |
simRNAseq |
Simulate RNA-seq count data |
summaryPower |
Generate a summary table for power analysis result |