asBED-method | Extract genomic features from an object |
asGFF-method | Extract genomic features from an object |
cds-method | Extract genomic features from an object |
cdsBy-method | Extract genomic features from an object |
class:OrganismDb | OrganismDb objects |
columns-method | OrganismDb objects |
dbconn-method | OrganismDb objects |
dbfile-method | OrganismDb objects |
disjointExons-method | Extract genomic features from an object |
distance-method | Extract genomic features from an object |
exons-method | Extract genomic features from an object |
exonsBy-method | Extract genomic features from an object |
extractTranscriptSeqs-method | Extract genomic features from an object |
extractUpstreamSeqs-method | Extract genomic features from an object |
fiveUTRsByTranscript-method | Extract genomic features from an object |
genes-method | Extract genomic features from an object |
getTxDbIfAvailable | Extract genomic features from an object |
getTxDbIfAvailable-method | Extract genomic features from an object |
intronsByTranscript-method | Extract genomic features from an object |
isActiveSeq-method | Extract genomic features from an object |
isActiveSeq<--method | Extract genomic features from an object |
keys-method | OrganismDb objects |
keytypes-method | OrganismDb objects |
makeOrganismPackage | Making OrganismDb packages from annotation packages. |
mapToTranscripts-method | Map range coordinates between transcripts and genome space |
metadata-method | OrganismDb objects |
microRNAs-method | Extract genomic features from an object |
OrganismDb | OrganismDb objects |
OrganismDb-class | OrganismDb objects |
promoters-method | Extract genomic features from an object |
select-method | OrganismDb objects |
seqinfo-method | OrganismDb objects |
threeUTRsByTranscript-method | Extract genomic features from an object |
transcripts-method | Extract genomic features from an object |
transcriptsBy-method | Extract genomic features from an object |
tRNAs-method | Extract genomic features from an object |