NGScopy: Detection of Copy Number Variations in Next Generation Sequencing sequencing


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Documentation for package ‘NGScopy’ version 1.2.2

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NGScopy-package NGScopy: Detection of copy number variations in next generation sequencing
df.to.gr Convert a data.frame to a GRanges object
help_segmtype Get help for segmentation functions
NGScopy Detection of copy number variations in next generation sequencing (NGS)
NGScopy-class Detection of copy number variations in next generation sequencing (NGS)
ngscopy_cmdline_example Run an example of NGScopy at UNIX-like command line
ngscopy_unittest A wrapper to run unit testing of NGScopy
parse_segmtype Parse the type of segmentation
read_regions Read regions from a data.frame, a file or a connection.