Metab-package |
Metab processes metabolomics data previously analyzed by the Automated Mass Spectral and Deconvolution System (AMDIS). |
buildLib |
buildLib converts an AMDIS' library into a CSV file in the formated required by Metab. |
exampleAMDISReport |
AMDIS report. |
exampleBiomass |
An example of the biomass data frame to be used in conjunction with the function normalizeByBiomass. |
exampleHtest |
An example of the results obtained using the function htest. |
exampleIonLib |
An example of the ionLib required by Metab. |
exampleMetReport |
An example of the results obtained using the function exampleMetReport. |
exampleMSLfile |
An example of MSL file of an AMDIS library. |
htest |
Function developed to apply t-test or ANOVA on a data frame. |
Metab |
Metab processes metabolomics data previously analyzed by the Automated Mass Spectral and Deconvolution System (AMDIS). |
MetReport |
MetReport cleans and corrects results generated by the Automated Mass Spectral Deconvolution and Identification System (AMDIS). |
MetReportNames |
MetReportNames cleans results obtained with the Automated Mass Spectral Deconvolution and Identification System (AMDIS). |
normalizeByBiomass |
A function to normalize metabolomics data by the biomass associated to each biological sample (e.g. cell number or O.D.) |
normalizeByInternalStandard |
Normalize metabolomics data sets by a specific metabolite defined as internal standard. |
removeFalsePositives |
removeFalsePositives is a function to exclude from a data frame metabolites considered false positives. |