GO-terms Semantic Similarity Measures


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Documentation for package ‘GOSemSim’ version 1.26.0

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GOSemSim-package Gene Ontology-based Sematic Similarity Measures
clusterSim Semantic Similarity Between Two Gene Clusters
combineScores combining similarity matrix to similarity score
geneSim Semantic Similarity Between two Genes
getDb getDb
getSupported_Org getSupported_Org
GOSemSim Gene Ontology-based Sematic Similarity Measures
goSim Semantic Similarity Between Two GO Terms
IC Information content of GO terms
infoContentMethod information content based methods
Info_Contents_anopheles_BP Information content of GO terms
Info_Contents_anopheles_CC Information content of GO terms
Info_Contents_anopheles_MF Information content of GO terms
Info_Contents_arabidopsis_BP Information content of GO terms
Info_Contents_arabidopsis_CC Information content of GO terms
Info_Contents_arabidopsis_MF Information content of GO terms
Info_Contents_bovine_BP Information content of GO terms
Info_Contents_bovine_CC Information content of GO terms
Info_Contents_bovine_MF Information content of GO terms
Info_Contents_canine_BP Information content of GO terms
Info_Contents_canine_CC Information content of GO terms
Info_Contents_canine_MF Information content of GO terms
Info_Contents_chicken_BP Information content of GO terms
Info_Contents_chicken_CC Information content of GO terms
Info_Contents_chicken_MF Information content of GO terms
Info_Contents_chimp_BP Information content of GO terms
Info_Contents_chimp_CC Information content of GO terms
Info_Contents_chimp_MF Information content of GO terms
Info_Contents_coelicolor_BP Information content of GO terms
Info_Contents_coelicolor_CC Information content of GO terms
Info_Contents_coelicolor_MF Information content of GO terms
Info_Contents_ecolik12_BP Information content of GO terms
Info_Contents_ecolik12_CC Information content of GO terms
Info_Contents_ecolik12_MF Information content of GO terms
Info_Contents_ecsakai_BP Information content of GO terms
Info_Contents_ecsakai_CC Information content of GO terms
Info_Contents_ecsakai_MF Information content of GO terms
Info_Contents_fly_BP Information content of GO terms
Info_Contents_fly_CC Information content of GO terms
Info_Contents_fly_MF Information content of GO terms
Info_Contents_gondii_BP Information content of GO terms
Info_Contents_gondii_CC Information content of GO terms
Info_Contents_gondii_MF Information content of GO terms
Info_Contents_human_BP Information content of GO terms
Info_Contents_human_CC Information content of GO terms
Info_Contents_human_MF Information content of GO terms
Info_Contents_malaria_BP Information content of GO terms
Info_Contents_malaria_CC Information content of GO terms
Info_Contents_malaria_MF Information content of GO terms
Info_Contents_mouse_BP Information content of GO terms
Info_Contents_mouse_CC Information content of GO terms
Info_Contents_mouse_MF Information content of GO terms
Info_Contents_pig_BP Information content of GO terms
Info_Contents_pig_CC Information content of GO terms
Info_Contents_pig_MF Information content of GO terms
Info_Contents_rat_BP Information content of GO terms
Info_Contents_rat_CC Information content of GO terms
Info_Contents_rat_MF Information content of GO terms
Info_Contents_rhesus_BP Information content of GO terms
Info_Contents_rhesus_CC Information content of GO terms
Info_Contents_rhesus_MF Information content of GO terms
Info_Contents_worm_BP Information content of GO terms
Info_Contents_worm_CC Information content of GO terms
Info_Contents_worm_MF Information content of GO terms
Info_Contents_xenopus_BP Information content of GO terms
Info_Contents_xenopus_CC Information content of GO terms
Info_Contents_xenopus_MF Information content of GO terms
Info_Contents_yeast_BP Information content of GO terms
Info_Contents_yeast_CC Information content of GO terms
Info_Contents_yeast_MF Information content of GO terms
Info_Contents_zebrafish_BP Information content of GO terms
Info_Contents_zebrafish_CC Information content of GO terms
Info_Contents_zebrafish_MF Information content of GO terms
loadGOMap loadGOMap
loadICdata Load IC data
mclusterSim Pairwise Semantic Similarities for a List of Gene Clusters
mgeneSim Pairwise Semantic Similarity for a List of Genes
mgoSim Semantic Similarity Between two GO terms lists
termSim termSim
wangMethod wangMethod