ChIPXpress-package |
ChIPXpress ranks TF target genes given predicted TF targets from ChIP-chip and ChIP-seq data using publicly available gene expression data |
buildDatabase |
Builds a new database of gene expression profiles from a specified platform or sample files in NCBI GEO. |
ChIPXpress |
ChIPXpress Ranking |
cleanDatabase |
Cleans the annotated output from buildDatabase to the required format for ChIPXpress analyses |
Oct4ESC_ChIPgenes |
Predicted Oct4 bound genes in embryonic stem cells (ESC) obtained from analyzing ChIP-seq data |