bubbletree-package |
BubbleTree: a method to elucidate purity and clonality in tumors using copy number ratio and allele frequency. |
addBubble |
Draw a bubble |
BubbleTree |
BubbleTree: a method to elucidate purity and clonality in tumors using copy number ratio and allele frequency. |
bubbletree |
BubbleTree: a method to elucidate purity and clonality in tumors using copy number ratio and allele frequency. |
calc.prev |
Calculate tumor cell prevalence in a sample, an indication of sample purity |
cnv.gr |
A sample dataset of tumor segmented copy number variations |
compareBubbles |
compare bubbles from two samples |
drawBranches |
Plot branches of BubbleTree plot |
drawBubble |
Draw a bubble |
getRBD |
Get RBD (R-score BAF Dataframe) of the homogeneous SCNV segments |
hcc.rbd.lst |
Rbd data from the HCC samples |
hetero.gr |
BAF of the germline heterozygous loci in GRanges format |
plotBubbles |
Plot Bubbles |