A bioconductor package with minimalist design for plotting elegant track layers


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Documentation for package ‘trackViewer’ version 1.4.0

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trackViewer-package Minimal designed plotting tool for genomic data
$-method Class '"track"'
$<--method Class '"track"'
addArrowMark Add arrow mark to the figure at a given position
addGuideLine Add guide lines to the tracks
coverageGR calculate coverage
geneModelFromTxdb Prepare gene model from an object of TxDb
getCurTrackViewport Get current track viewport
importBam Reading data from a BAM file
importScore Reading data from a BED or WIG file
interactiveViewer plot the tracks with GUI
optimizeStyle Optimize the style of plot
plotGRanges plot GRanges data
pos Class '"pos"'
pos-class Class '"pos"'
setTrackStyleParam Class '"track"'
setTrackStyleParam-method Class '"track"'
setTrackViewerStyleParam Class '"trackViewerStyle"'
setTrackViewerStyleParam-method Class '"trackViewerStyle"'
setTrackXscaleParam Class '"track"'
setTrackXscaleParam-method Class '"track"'
setTrackYaxisParam Class '"track"'
setTrackYaxisParam-method Class '"track"'
show-method Class '"track"'
track Class '"track"'
track-class Class '"track"'
trackList List of tracks
trackList-class List of tracks
trackStyle Class '"trackStyle"'
trackStyle-class Class '"trackStyle"'
trackViewer Minimal designed plotting tool for genomic data
trackViewerStyle Class '"trackViewerStyle"'
trackViewerStyle-class Class '"trackViewerStyle"'
viewTracks plot the tracks
xscale Class '"xscale"'
xscale-class Class '"xscale"'
yaxisStyle Class '"yaxisStyle"'
yaxisStyle-class Class '"yaxisStyle"'