Benchmarking of several gene network inference methods


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Documentation for package ‘netbenchmark’ version 1.0.3

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netbenchmark-package Benchmarking of several inference networks methods
aracne.wrap aracne wrapper function
aupr Compute metrics
auroc Compute metrics
c3net.wrap c3net wrapper function
clr.wrap CLR wrapper function
comp.metr Compute metrics
datasource.subsample Subsampling datasource procedure
evaluate Inference Evaluation
experiments.bench Noise sensitivity benchmark
fscore Compute metrics
GeneNet.wrap GeneNet wrapper function
Genie3.wrap Genie3 wrapper function
mean.pr Compute metrics
mrnet.wrap mrnet wrapper function
mrnetb.wrap mrnetb wrapper function
mutrank.wrap Mutual Rank wrapper function
netbenchmark Benchmarking of several network inference algorithms from data
netbenchmark_rate Inference Validation
netbenchmark_zsc Z-score c++ function
noise.bench Noise sensitivity test
pcit.wrap pcit wrapper function
pr.compute Compute metrics
pr.plot Compute metrics
rate Inference Validation
roc.compute Compute metrics
roc.plot Compute metrics
zsc Z-score c++ function
zscore.wrap Zscore wrapper function