parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)


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Documentation for package ‘mzR’ version 2.2.2

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mzR-package parser for mzXML, mzData, mzML and mzid files (mass spectrometry data)
analyzer Access the metadata from an 'mzR' object.
analyzer-method Class 'mzR' and sub-classes
chromatogramsInfo Access the metadata from an 'mzR' object.
chromatogramsInfo-method Class 'mzR' and sub-classes
class:mzR Class 'mzR' and sub-classes
class:mzRident Class 'mzR' and sub-classes
class:mzRnetCDF Class 'mzR' and sub-classes
class:mzRpwiz Class 'mzR' and sub-classes
class:mzRramp Class 'mzR' and sub-classes
close Class 'mzR' and sub-classes
close-method Class 'mzR' and sub-classes
database Access the metadata from an 'mzR' object.
database-method Class 'mzR' and sub-classes
detector Access the metadata from an 'mzR' object.
detector-method Class 'mzR' and sub-classes
enzymes Access the metadata from an 'mzR' object.
enzymes-method Class 'mzR' and sub-classes
fileName Create and check mzR objects from netCDF, mzXML, mzData or mzML files.
fileName-method Class 'mzR' and sub-classes
get3Dmap Access the raw data from an 'mzR' object.
get3Dmap-method Class 'mzR' and sub-classes
header Access the raw data from an 'mzR' object.
header-method Class 'mzR' and sub-classes
initializeRamp Create and check mzR objects from netCDF, mzXML, mzData or mzML files.
initializeRamp-method Class 'mzR' and sub-classes
instrumentInfo Access the metadata from an 'mzR' object.
instrumentInfo-method Class 'mzR' and sub-classes
ionisation Access the metadata from an 'mzR' object.
ionisation-method Class 'mzR' and sub-classes
isInitialized Create and check mzR objects from netCDF, mzXML, mzData or mzML files.
isInitialized-method Class 'mzR' and sub-classes
length Class 'mzR' and sub-classes
length-method Class 'mzR' and sub-classes
manufacturer Access the metadata from an 'mzR' object.
manufacturer-method Class 'mzR' and sub-classes
model Access the metadata from an 'mzR' object.
model-method Class 'mzR' and sub-classes
modifications Access the metadata from an 'mzR' object.
modifications-method Class 'mzR' and sub-classes
mzidInfo Access the metadata from an 'mzR' object.
mzidInfo-method Class 'mzR' and sub-classes
mzR parser for mzXML, mzData, mzML and mzid files (mass spectrometry data)
mzR-class Class 'mzR' and sub-classes
mzRident-class Class 'mzR' and sub-classes
mzRnetCDF-class Class 'mzR' and sub-classes
mzRpwiz-class Class 'mzR' and sub-classes
mzRramp-class Class 'mzR' and sub-classes
openIDfile Create and check mzR objects from netCDF, mzXML, mzData or mzML files.
openMSfile Create and check mzR objects from netCDF, mzXML, mzData or mzML files.
para Access the metadata from an 'mzR' object.
para-method Class 'mzR' and sub-classes
peaks Access the raw data from an 'mzR' object.
peaks-method Class 'mzR' and sub-classes
peaksCount Access the raw data from an 'mzR' object.
peaksCount-method Class 'mzR' and sub-classes
psms Access the metadata from an 'mzR' object.
psms-method Class 'mzR' and sub-classes
runInfo Access the metadata from an 'mzR' object.
runInfo-method Class 'mzR' and sub-classes
sampleInfo Access the metadata from an 'mzR' object.
sampleInfo-method Class 'mzR' and sub-classes
score Access the metadata from an 'mzR' object.
score-method Class 'mzR' and sub-classes
softwareInfo Access the metadata from an 'mzR' object.
softwareInfo-method Class 'mzR' and sub-classes
sourceInfo Access the metadata from an 'mzR' object.
sourceInfo-method Class 'mzR' and sub-classes
substitutions Access the metadata from an 'mzR' object.
substitutions-method Class 'mzR' and sub-classes
tolerance Access the metadata from an 'mzR' object.
tolerance-method Class 'mzR' and sub-classes