Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems.


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Documentation for package ‘messina’ version 1.4.0

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messina-package The Messina package for classification and outlier differential expression.
kirc.exprs Example TCGA KIRC RNAseq expression and survival data
kirc.surv Example TCGA KIRC RNAseq expression and survival data
messina Find optimal single feature classifiers
MessinaClassResult-class The MessinaResult class
messinaDE Detect differential expression in the presence of outliers
MessinaFits-class The MessinaFits class
MessinaParameters-class The MessinaParameters class
MessinaResult-class The MessinaResult class
messinaSurv Find optimal prognostic features using the Messina algorithm
MessinaSurvResult-class The MessinaResult class
messinaTopResults Display a summary of the top results from a Messina analysis
plot-method Plot the results of a Messina analysis on a classification / differential expression problem.
plot-method Plot the results of a Messina analysis on a survival problem.
show-method Generic show methods for Messina objects.
tcga_kirc_example Example TCGA KIRC RNAseq expression and survival data