integrated Bayesian Modeling of eQTL data


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Documentation for package ‘iBMQ’ version 1.8.0

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iBMQ-package iBMQ : An Integrated Hierarchical Bayesian Model for Multivariate eQTL Mapping
calculateThreshold Calculate PPA significance threshold leading to a desired false discovery rate
eqtlClassifier Classifying the eQTLs
eqtlFinder eqtlFinder
eqtlMcmc Bayesian Multiple eQTL mapping using MCMC
gene Gene expression from whole eye tissue from n = 68 BXD RIS mice.
genepos Gene position data frame
genotype.liver A set of 290 SNPs from 60 F2 mice.
hotspotFinder hotspotFinder
iBMQ iBMQ : An Integrated Hierarchical Bayesian Model for Multivariate eQTL Mapping
map.liver SNP position data frame
phenotype.liver Gene expression from liver tissue from n = 60 F2 mice.
PPA.liver A matrix with Posterior Probabilities of Association
probe.liver Gene position data frame
snp A set of 1700 SNP from 68 BXD RIS mice.
snppos SNP position data frame