gespeR-package | Package: Gene-Specific Phenotype EstimatoR |
annotate.gsp | annotate.gsp |
annotate.gsp-method | annotate.gsp |
as.data.frame-method | Convert Phenotypes object to a data.frame |
as.data.frame.concordance | Coerce method |
c-method | Concatenate Phenotypes objects |
concordance | Evaluate the concordance between Phenotype objects |
gespeR | gespeR |
gespeR-class | gespeR |
gespeR-method | gespeR |
gespeRpkg | Package: Gene-Specific Phenotype EstimatoR |
gsp | Retrieve GSPs and SSPs from 'gespeR' objects |
gsp-method | Retrieve GSPs and SSPs from 'gespeR' objects |
join | join |
join-method | join |
lasso.rand | Randomized Lasso |
loadValues | Methods for values of 'TargetRelations' objects |
loadValues-method | Methods for values of 'TargetRelations' objects |
na.rem | Remove NA/Inf values from phenotype vectors |
na.rem-method | Remove NA/Inf values from phenotype vectors |
path<- | path |
path<--method | path |
Phenotypes | Phenotypes |
Phenotypes-class | Phenotypes |
Phenotypes-method | Phenotypes |
plot.concordance | Plot concordance |
plot.gespeR | Plot method for 'gespeR' objects |
plot.Phenotypes | Plot method for Phenotype objects |
rbo | Rank biased overlap (Webber et al., 2010) |
scores | scores |
scores-method | scores |
simData | Example phenotype and target relations data A, B, C, and D |
ssp | Retrieve GSPs and SSPs from 'gespeR' objects |
ssp-method | Retrieve GSPs and SSPs from 'gespeR' objects |
stability | stability |
stability-method | stability |
stability.selection | Stability Selection |
stabilityfits | Example fits for phenotypes from example screening data A, B, C and D |
target.relations | target.relations |
target.relations-method | target.relations |
TargetRelations | TargetRelations |
TargetRelations-class | TargetRelations |
TargetRelations-method | TargetRelations |
unloadValues | Methods for values of 'TargetRelations' objects |
unloadValues-method | Methods for values of 'TargetRelations' objects |
values | values |
values-method | values |
writeValues | Methods for values of 'TargetRelations' objects |
writeValues-method | Methods for values of 'TargetRelations' objects |
[-method | Subsetting for Phenotype objects. |
[-method | Subsetting for TargetRelations objects. |