Bayesian Inference of Regulation of Transcriptional Activity


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Documentation for package ‘birta’ version 1.12.0

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birta-package Joint Bayesian Inference of miRNA and Transcription Factor Activities
birta Main interface for Bayesian Inference of Regulation of Transcriptional Activity.
birta-method Methods for Function 'birta' in Package 'birta'
birta-methods Methods for Function 'birta' in Package 'birta'
EColiNetwork Example TF-target graph from Regulon DB.
EColiOxygen Example data set from E. Coli to sample TF activities.
genesets TF-target and miRNA-target networks for simulated example.
get_potential_swaps Calculate swap partner for TF-/miRNA-target graph.
limmaAnalysis Perform a limma analysis on expression data.
limmaAnalysis-method Methods for Function 'limmaAnalysis' in Package 'birta'
limmaAnalysis-methods Methods for Function 'limmaAnalysis' in Package 'birta'
plotConvergence Plotting the likelihood along MCMC sampling.
potential_swaps Potential swap moves for TF-target and miRNA-target networks (see genestes data set).
sim Simulated expression data for mRNAs and miRNAs.
TFexpr Transcription factor expression values for the aerobic-anaerobic growth experiment.