birta-package |
Joint Bayesian Inference of miRNA and Transcription Factor Activities |
birta |
Main interface for Bayesian Inference of Regulation of Transcriptional Activity. |
birta-method |
Methods for Function 'birta' in Package 'birta' |
birta-methods |
Methods for Function 'birta' in Package 'birta' |
EColiNetwork |
Example TF-target graph from Regulon DB. |
EColiOxygen |
Example data set from E. Coli to sample TF activities. |
genesets |
TF-target and miRNA-target networks for simulated example. |
get_potential_swaps |
Calculate swap partner for TF-/miRNA-target graph. |
limmaAnalysis |
Perform a limma analysis on expression data. |
limmaAnalysis-method |
Methods for Function 'limmaAnalysis' in Package 'birta' |
limmaAnalysis-methods |
Methods for Function 'limmaAnalysis' in Package 'birta' |
plotConvergence |
Plotting the likelihood along MCMC sampling. |
potential_swaps |
Potential swap moves for TF-target and miRNA-target networks (see genestes data set). |
sim |
Simulated expression data for mRNAs and miRNAs. |
TFexpr |
Transcription factor expression values for the aerobic-anaerobic growth experiment. |