Rqc-package | Quality Control Tool for High-Throughput Sequencing Data |
perCycleBasecall | Frequency distribution of cycle-specific base call |
perCycleQuality | Frequency distribution of cycle-specific quality |
perFileInformation | File information |
perReadQuality | Frequency distribution of per read mean quality |
perReadWidth | Frequency distribution of read width |
Rqc | Quality Control Tool for High-Throughput Sequencing Data |
rqc | Main Rqc function |
rqcCycleAverageQualityCalc | Per cycle average quality calculation |
rqcCycleAverageQualityPcaCalc | PCA calculation of per cycle read average quality |
rqcCycleAverageQualityPcaPlot | Biplot of PCA of per cycle read average quality |
rqcCycleAverageQualityPlot | Per cycle average quality plot |
rqcCycleBaseCallsCalc | Per cycle base call calculation |
rqcCycleBaseCallsLinePlot | Per cycle base calls line plot |
rqcCycleBaseCallsPlot | Per cycle base calls plot |
rqcCycleGCCalc | Per cycle percentual GC. |
rqcCycleGCPlot | Per cycle percentual GC plot |
rqcCycleQualityBoxCalc | Per cycle quality percentiles calculation for boxplot |
rqcCycleQualityBoxPlot | Per cycle quality box plot |
rqcCycleQualityCalc | Per cycle quality calculation |
rqcCycleQualityPlot | Per cycle quality plot |
rqcQA | Quality Assessment Rqc function |
rqcReadQualityBoxCalc | Per read mean quality percentiles calculation for boxplot |
rqcReadQualityBoxPlot | Per read mean quality box plot |
rqcReadQualityCalc | Per read quality calculation |
rqcReadQualityPlot | Per read quality plot |
rqcReadWidthCalc | Per read width calculation |
rqcReadWidthPlot | Per read width plot |
rqcReport | Quality Control HTML Report |
RqcResultSet | Quality control data |
RqcResultSet-class | Quality control data |
stats4trim | Minimun read mean quality and maximum percentage loss of reads estimations for trimming step. |