AmiGO visualize R interface


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Documentation for package ‘RamiGO’ version 1.14.0

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adjM2gml Create GML file from readAmigoDot output.
adjMatrix AmigoDot constructor and accessors
adjMatrix-method AmigoDot constructor and accessors
adjMatrix<- AmigoDot constructor and accessors
adjMatrix<--method AmigoDot constructor and accessors
agraph AmigoDot constructor and accessors
agraph-method AmigoDot constructor and accessors
agraph<- AmigoDot constructor and accessors
agraph<--method AmigoDot constructor and accessors
AmigoDot AmigoDot constructor and accessors
AmigoDot-class Class "AmigoDot"
AmigoDot.to.Cyto Opening the AmigoDot graph in Cytoscape through RCytoscape.
AmigoDot.to.graphAM Converts an AmigoDot S4 object to a graphAM object.
AmigoDot.to.graphNEL Converts an AmigoDot S4 object to a graphNEL object.
annot AmigoDot constructor and accessors
annot-method AmigoDot constructor and accessors
annot<- AmigoDot constructor and accessors
annot<--method AmigoDot constructor and accessors
c5.go.mapping MSigDB C5 GO term to GO ID mapping
exportCytoGML Writes out an igraph graph to a Cytoscape readable GML file.
getAmigoTree Getting the DAG GO tree for a set of GO ID's.
igraph-class Class '"igraph"'
leaves AmigoDot constructor and accessors
leaves-method AmigoDot constructor and accessors
leaves<- AmigoDot constructor and accessors
leaves<--method AmigoDot constructor and accessors
RamiGO AmiGO visualize R interface
readAmigoDot Parser for the GraphViz DOT format.
relations AmigoDot constructor and accessors
relations-method AmigoDot constructor and accessors
relations<- AmigoDot constructor and accessors
relations<--method AmigoDot constructor and accessors