adjM2gml | Create GML file from readAmigoDot output. |
adjMatrix | AmigoDot constructor and accessors |
adjMatrix-method | AmigoDot constructor and accessors |
adjMatrix<- | AmigoDot constructor and accessors |
adjMatrix<--method | AmigoDot constructor and accessors |
agraph | AmigoDot constructor and accessors |
agraph-method | AmigoDot constructor and accessors |
agraph<- | AmigoDot constructor and accessors |
agraph<--method | AmigoDot constructor and accessors |
AmigoDot | AmigoDot constructor and accessors |
AmigoDot-class | Class "AmigoDot" |
AmigoDot.to.Cyto | Opening the AmigoDot graph in Cytoscape through RCytoscape. |
AmigoDot.to.graphAM | Converts an AmigoDot S4 object to a graphAM object. |
AmigoDot.to.graphNEL | Converts an AmigoDot S4 object to a graphNEL object. |
annot | AmigoDot constructor and accessors |
annot-method | AmigoDot constructor and accessors |
annot<- | AmigoDot constructor and accessors |
annot<--method | AmigoDot constructor and accessors |
c5.go.mapping | MSigDB C5 GO term to GO ID mapping |
exportCytoGML | Writes out an igraph graph to a Cytoscape readable GML file. |
getAmigoTree | Getting the DAG GO tree for a set of GO ID's. |
igraph-class | Class '"igraph"' |
leaves | AmigoDot constructor and accessors |
leaves-method | AmigoDot constructor and accessors |
leaves<- | AmigoDot constructor and accessors |
leaves<--method | AmigoDot constructor and accessors |
RamiGO | AmiGO visualize R interface |
readAmigoDot | Parser for the GraphViz DOT format. |
relations | AmigoDot constructor and accessors |
relations-method | AmigoDot constructor and accessors |
relations<- | AmigoDot constructor and accessors |
relations<--method | AmigoDot constructor and accessors |