InPAS-package |
alternative polyadenylation and cleavage estimations |
coverageFromBedGraph |
read coverage from bedGraph files |
CPsites |
predict the cleavage and polyadenylation(CP) site |
InPAS |
alternative polyadenylation and cleavage estimations |
inPAS |
do estimation of alternative polyadenylation and cleavage site in one step |
usage4plot |
prepare coverage data and fitting data for plot |
utr3.hg19 |
3'UTR annotation for hg19 obtained from utr3Annotation |
utr3.mm10 |
3'UTR annotation for mm10 obtained from utr3Annotation |
utr3Annotation |
extract 3'UTR from TxDb object |
utr3UsageEstimation |
estimation of 3'UTR usage for each region |