Identification of Novel alternative PolyAdenylation Sites (PAS)


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Documentation for package ‘InPAS’ version 1.0.6

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InPAS-package alternative polyadenylation and cleavage estimations
coverageFromBedGraph read coverage from bedGraph files
CPsites predict the cleavage and polyadenylation(CP) site
InPAS alternative polyadenylation and cleavage estimations
inPAS do estimation of alternative polyadenylation and cleavage site in one step
usage4plot prepare coverage data and fitting data for plot
utr3.hg19 3'UTR annotation for hg19 obtained from utr3Annotation
utr3.mm10 3'UTR annotation for mm10 obtained from utr3Annotation
utr3Annotation extract 3'UTR from TxDb object
utr3UsageEstimation estimation of 3'UTR usage for each region