Identification of genetic Variants affecting Alternative Splicing


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Documentation for package ‘IVAS’ version 1.0.0

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IVAS-package IVAS : Identification of genomic variants affecting Alternative Splicing
calSignificant Calculates P.values by using two statistical models.
chrseparate Separate a TranscriptDb object based on a chromosome.
findAlternative Find alternative exons of a gene.
findOversnp Find SNPs which belongs to alternative exons and flanking introns of them.
IVAS IVAS : Identification of genomic variants affecting Alternative Splicing
MsqtlFinder Find SQTLs in multiple genes.
sampleexp CEU expression data
samplesnp CEU genotype data
samplesnplocus snplocus
saveBplot Save boxplots
sqtlfinder Find SQTLs.