Using self-organizing maps for visualization and interpretation of cytometry data


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Documentation for package ‘FlowSOM’ version 1.0.0

Help Pages

AggregateFlowFrames Aggregate multiple fcs files together
BuildMST Build Minimal Spanning Tree
BuildSOM Build a self-organizing map
CountGroups Compute differences between groups
FlowSOM Run the FlowSOM algorithm
FlowSOMSubset FlowSOM subset
FMeasure FMeasure of a clustering result
MetaClustering MetaClustering
metaClustering_consensus MetaClustering
NewData Map new data to a FlowSOM grid
PlotCenters Plot cluster centers on a 2D plot
PlotClusters2D Plot nodes on scatter plot
PlotGroups Plot differences between groups
PlotMarker Plot marker values
PlotPies Plot comparison with other clustering
PlotStars Plot star charts
Purity Purity of a clustering result
ReadInput Read fcs-files or flowframes
UpdateNodeSize Update nodesize of FlowSOM object