Experimental Design in Differential Abundance analysis


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Documentation for package ‘EDDA’ version 1.6.0

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EDDA-package Experimental Design in Differential Abundance analysis
BP BaySeq Profile used in simulations by Hardcastle et al
computeAUC compute AUC values.
EDDA Experimental Design in Differential Abundance analysis
generateData generate count data
HBR Average abundance for RNA-seq data from Human Brain Reference.
plotPRC plot precision-recall curves
plotROC plot Receiver Operating Characteristic curve
SingleCell Single-cell RNA-seq data for model free simulation
testDATs Run differential abundance testings
Wu Average abundance for RNA-seq data from schizophrenia.