ComplexHeatmap-package | Making complex heatmap |
+.AdditiveUnit | Add heatmaps or row annotations to a heatmap list |
AdditiveUnit | Constructor method for AdditiveUnit class |
AdditiveUnit-class | An internal class |
add_heatmap | Method dispatch page for add_heatmap |
add_heatmap-method | Add heatmaps or row annotations as a heatmap list |
add_heatmap-method | Add row annotations or heatmaps as a heatmap list |
add_heatmap-method | Add heatmaps and row annotations to the heatmap list |
annotation_legend_size | Size of the annotation legend viewport |
annotation_legend_size-method | Size of the annotation legend viewport |
anno_barplot | Using barplot as annotation |
anno_boxplot | Using boxplot as annotation |
anno_density | Using kernel density as annotation |
anno_histogram | Using histogram as annotation |
anno_points | Using points as annotation |
ColorMapping | Constructor methods for ColorMapping class |
ColorMapping-class | Class to map values to colors |
color_mapping_legend | Draw legend based on color mapping |
color_mapping_legend-method | Draw legend based on color mapping |
component_height | Method dispatch page for component_height |
component_height-method | Height of each heatmap component |
component_height-method | Height of each heatmap list component |
component_width | Method dispatch page for component_width |
component_width-method | Width of each heatmap component |
component_width-method | Width of each heatmap list component |
dist2 | Calculate distance from a matrix |
draw | Method dispatch page for draw |
draw-method | Draw a single heatmap |
draw-method | Draw the heatmap annotations |
draw-method | Draw a list of heatmaps |
draw-method | Draw the single annotation |
draw_annotation | Draw column annotations |
draw_annotation-method | Draw column annotations |
draw_annotation_legend | Draw legends for all column annotations |
draw_annotation_legend-method | Draw legends for all column annotations |
draw_dimnames | Draw row names or column names |
draw_dimnames-method | Draw row names or column names |
draw_hclust | Draw dendrogram on row or column |
draw_hclust-method | Draw dendrogram on row or column |
draw_heatmap_body | Draw the heatmap body |
draw_heatmap_body-method | Draw the heatmap body |
draw_heatmap_legend | Draw legends for all heatmaps |
draw_heatmap_legend-method | Draw legends for all heatmaps |
draw_heatmap_list | Draw the list of heatmaps |
draw_heatmap_list-method | Draw the list of heatmaps |
draw_title | Method dispatch page for draw_title |
draw_title-method | Draw heatmap title |
draw_title-method | Draw heatmap list title |
get_color_mapping_list | Get a list of color mapping objects |
get_color_mapping_list-method | Get a list of color mapping objects |
grid.dendrogram | Draw dendrogram under grid system |
Heatmap | Constructor method for Heatmap class |
Heatmap-class | Class for a single heatmap |
HeatmapAnnotation | Constructor method for HeatmapAnnotation class |
HeatmapAnnotation-class | Class for heatmap annotations |
HeatmapList | Constructor method for HeatmapList class |
HeatmapList-class | Class for a list of heatmaps |
heatmap_legend_size | Size of the heatmap legend viewport |
heatmap_legend_size-method | Size of the heatmap legend viewport |
make_column_cluster | Make cluster on columns |
make_column_cluster-method | Make cluster on columns |
make_layout | Method dispatch page for make_layout |
make_layout-method | Make the layout of a single heatmap |
make_layout-method | Make layout for the complete plot |
make_row_cluster | Make cluster on rows |
make_row_cluster-method | Make cluster on rows |
map_to_colors | Map values to colors |
map_to_colors-method | Map values to colors |
prepare | Prepare the heatmap |
prepare-method | Prepare the heatmap |
set_component_height | Set height of each heatmap component |
set_component_height-method | Set height of each heatmap component |
show | Method dispatch page for show |
show-method | Print ColorMapping object |
show-method | Draw the single heatmap with default parameters |
show-method | Print the Heatmap Annotation object |
show-method | Draw a list of heatmaps with default parameters |
show-method | Print the SingleAnnotation object |
SingleAnnotation | Constructor method for SingleAnnotation class |
SingleAnnotation-class | Class for a single annotation |