additive.test | A test for gene-environment interaction under an additive risk model for case-control data |
CGEN | An R package for analysis of case-control studies in genetic epidemiology |
chromosome.plot | Chromosome plot |
getMatchedSets | Case-Control and Nearest-Neighbor Matching |
getSummary | Compute summary information |
getWaldTest | Compute a Wald test |
GxE.scan | GxE analysis for an array of SNPs |
GxE.scan.combine | Combines output files into one file |
GxE.scan.partition | Creates GxE.scan job files for a computing cluster |
locusMap.list | List to describe the locus map data |
LocusMapData | Locus map data |
pheno.list | List to describe the covariate and outcome data |
printEffects | Print an effects table |
QQ.plot | QQ plot |
recode.geno | Recode a vector of genotypes |
sas.list | List for SAS data sets |
score.test | A test for gene-environment interaction under an additive risk model for case-control data |
snp.effects | Joint and Stratified Effects |
snp.effects.plot | Effects plot |
snp.list | List to describe the genotype data |
snp.logistic | Logistic regression analysis for a single SNP |
snp.matched | Robust G-G and G-E Interaction with Finely-Matched Case-Control Data. |
snp.scan.logistic | Logistic regression analysis for an array of SNPs |
SNPdata | Sample genotype data |
subject.list | List to describe the file of subject ids |
Xdata | Sample covariate and outcome data |