High-performing routines for the randomization of a bipartite graph (or a binary event matrix) and directed signed graph preserving degree distribution (or marginal totals).


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Documentation for package ‘BiRewire’ version 2.2.3

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BiRewire-package The BiRewire package
BiRewire The BiRewire package
birewire.analysis.bipartite Analysis of Jaccard similarity trends across switching steps.
birewire.analysis.undirected Analysis of Jaccard similarity trends across switching steps.
birewire.bipartite.from.incidence Converts an incidence matrix into a bipartite graph.
birewire.rewire.bipartite Efficient rewiring of bipartite graphs
birewire.rewire.bipartite.and.projections Analysis and rewiring function processing a bipartite graphs and its two projections
birewire.rewire.undirected Efficient rewiring of undirected graphs
birewire.sampler.bipartite Efficient generation of a null model for a given bipartite graph
birewire.sampler.undirected Efficient generation of a null model for a given undirected graph
birewire.similarity Compute the Jaccard similarity index between two binary matrices with the same number of non-null entries and the sam row- and column-wise sums.
birewire.visual.monitoring.bipartite Visual monitoring of the Markov chain underlying the SA for directed graphs.
birewire.visual.monitoring.undirected Visual monitoring of the Markov chain underlying the SA for undirected graphs.
BRCA_binary_matrix TCGA Brest Cancer data