To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("pepDat")
In most cases, you don't need to download the package archive at all.
pepDat
Peptide microarray data package
Bioconductor version: 3.0
Provides sample files and data for the vignettes of pepStat and Pviz as well as peptide collections for HIV and SIV.
Author: Renan Sauteraud, Raphael Gottardo
Maintainer: Renan Sauteraud <rsautera at fhcrc.org>
Citation (from within R,
enter citation("pepDat")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("pepDat")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pepDat")
| R Script | The pepDat users guide | |
| Reference Manual |
Details
| biocViews | ExperimentData, Microarray |
| Version | 1.0.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.0) |
| Imports | GenomicRanges |
| LinkingTo | |
| Suggests | knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | pepStat, Pviz |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | pepDat_1.0.0.tar.gz |
| Windows Binary | pepDat_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | pepDat_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | pepDat_1.0.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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