To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("parathyroid")

In most cases, you don't need to download the package archive at all.

parathyroid

RNA-Seq data of primary cultures of parathyroid tumors by Haglund et al., J Clin Endocrinol Metab 2012.

Bioconductor version: 3.0

This package provides a CountDataSet and ExonCountSet of read counts for paired-end RNA-Seq data from experiments on primary cultures of parathyroid tumors. The data were presented in the article "Evidence of a Functional Estrogen Receptor in Parathyroid Adenomas" by Haglund F, Ma R, Huss M, Sulaiman L, Lu M, Nilsson IL, Hoog A, Juhlin CC, Hartman J, Larsson C, J Clin Endocrinol Metab. jc.2012-2484, Epub 2012 Sep 28, PMID: 23024189. The sequencing was performed on tumor cultures from 4 patients at 2 time points over 3 conditions (DPN, OHT and control). One control sample was omitted by the paper authors due to low quality. The package vignette describes the creation of objects from raw sequencing data provided by NCBI Gene Expression Omnibus under accession number GSE37211. The gene and exon features are the GRCh37 Ensembl annotations, release 66.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("parathyroid")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("parathyroid")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("parathyroid")

 

PDF R Script parathyroidExons and parathyroidGenes
PDF   Reference Manual

Details

biocViews ExperimentData, RNAseqData
Version 1.1.1
License LGPL
Depends DEXSeq, DESeq, R (>= 2.10)
Imports
LinkingTo
Suggests GEOquery, SRAdb
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source parathyroid_1.1.1.tar.gz
Windows Binary parathyroid_1.1.1.zip
Mac OS X 10.6 (Snow Leopard) parathyroid_1.1.1.tgz
Mac OS X 10.9 (Mavericks) parathyroid_1.1.1.tgz
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