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biocLite("davidTiling")

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davidTiling

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Bioconductor version: 3.0

This package contains the data for the paper by L. David et al. in PNAS 2006 (PMID 16569694): 8 CEL files of Affymetrix genechips, an ExpressionSet object with the raw feature data, a probe annotation data structure for the chip and the yeast genome annotation (GFF file) that was used. In addition, some custom-written analysis functions are provided, as well as R scripts in the scripts directory.

Author: Wolfgang Huber <huber at ebi.ac.uk>, Joern Toedling <toedling at ebi.ac.uk>

Maintainer: Wolfgang Huber <huber at ebi.ac.uk>

Citation (from within R, enter citation("davidTiling")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("davidTiling")

Documentation


PDF		Reference Manual

Details

biocViews	ExperimentData, Yeast
Version	1.5.1
License	LGPL
Depends	R (>= 2.10), Biobase(>= 2.5.5), tilingArray, GO.db
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://www.ebi.ac.uk/huber
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	davidTiling_1.5.1.tar.gz
Windows Binary	davidTiling_1.5.1.zip
Mac OS X 10.6 (Snow Leopard)	davidTiling_1.5.1.tgz
Mac OS X 10.9 (Mavericks)	davidTiling_1.5.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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