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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("curatedCRCData")
In most cases, you don't need to download the package archive at all.
curatedCRCData
Colorectal Cancer Gene Expression Analysis
Bioconductor version: 3.0
The curatedCRC package provides relevant functions and data for gene expression analysis in patients with colorectal cancer.
Author: Princy Parsana, Markus Riester, Curtis Huttenhower, Levi Waldron
Maintainer: Princy Parsana <princyparsana at jhu.edu>
Citation (from within R,
enter citation("curatedCRCData")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("curatedCRCData")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("curatedCRCData")
| curatedCRCData | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Cancer, Colorectal, ExperimentData, TCGA |
| Version | 1.1.2 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10.0), nlme |
| Imports | |
| LinkingTo | |
| Suggests | survival, sva, BiocStyle, xtable, genefilter, logging, Biobase |
| SystemRequirements | |
| Enhances | |
| URL | https://bitbucket.org/lwaldron/curatedcrcdata |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | curatedCRCData_1.1.2.tar.gz |
| Windows Binary | curatedCRCData_1.1.2.zip |
| Mac OS X 10.6 (Snow Leopard) | curatedCRCData_1.1.2.tgz |
| Mac OS X 10.9 (Mavericks) | curatedCRCData_1.1.2.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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