- Home
- Bioconductor 3.0
- Experiment Packages
- colonCA
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("colonCA")
In most cases, you don't need to download the package archive at all.
colonCA
exprSet for Alon et al. (1999) colon cancer data
Bioconductor version: 3.0
exprSet for Alon et al. (1999) colon cancer data
Author: Sylvia Merk
Maintainer: W Sylvia Merk <sylvia.merk at ukmuenster.de>
Citation (from within R,
enter citation("colonCA")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("colonCA")
Documentation
| Reference Manual |
Details
| biocViews | Cancer, Colon, ExperimentData |
| Version | 1.7.1 |
| License | LGPL |
| Depends | Biobase(>= 2.5.5) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | copa |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | colonCA_1.7.1.tar.gz |
| Windows Binary | colonCA_1.7.1.zip |
| Mac OS X 10.6 (Snow Leopard) | colonCA_1.7.1.tgz |
| Mac OS X 10.9 (Mavericks) | colonCA_1.7.1.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: support.bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2015, Bioconductor
