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biocLite("PREDAsampledata")
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PREDAsampledata
expression and copy number data on clear cell renal carcinoma samples
Bioconductor version: 3.0
Sample data for PREDA package. (annotations objects synchronized with GeneAnnot custom CDFs version 2.2.0)
Author: I. Cifola et al. in Cristina Battaglia Lab, University of Milan
Maintainer: Francesco Ferrari <francesco.ferrari at unimore.it>
Citation (from within R,
enter citation("PREDAsampledata")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("PREDAsampledata")
Documentation
| Reference Manual |
Details
| biocViews | Cancer, ExperimentData |
| Version | 0.5.1 |
| License | Artistic-2.0 |
| Depends | R (>= 2.9.0), methods, PREDA, Biobase, affy, annotate, gahgu133plus2.db, gahgu133plus2cdf |
| Imports | |
| LinkingTo | |
| Suggests | hgu133plus2.db, hgu133plus2cdf |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | PREDA |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | PREDAsampledata_0.5.1.tar.gz |
| Windows Binary | PREDAsampledata_0.5.1.zip |
| Mac OS X 10.6 (Snow Leopard) | PREDAsampledata_0.5.1.tgz |
| Mac OS X 10.9 (Mavericks) | PREDAsampledata_0.5.1.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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