To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("HiCDataLymphoblast")

In most cases, you don't need to download the package archive at all.

HiCDataLymphoblast

Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009

Bioconductor version: 3.0

The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.

Author: Borbala Mifsud

Maintainer: Borbala Mifsud <Borbala.Mifsud at cancer.org.uk>

Citation (from within R, enter citation("HiCDataLymphoblast")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("HiCDataLymphoblast")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataLymphoblast")

PDF		package_vignettes.pdf
PDF		Reference Manual

Details

biocViews	ExperimentData, HighThroughputSequencingData
Version	1.1.1
License	GPL-3
Depends
Imports
LinkingTo
Suggests	GOTHiC, ShortRead
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	GOTHiC
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	HiCDataLymphoblast_1.1.1.tar.gz
Windows Binary	HiCDataLymphoblast_1.1.1.zip
Mac OS X 10.6 (Snow Leopard)	HiCDataLymphoblast_1.1.1.tgz
Mac OS X 10.9 (Mavericks)	HiCDataLymphoblast_1.1.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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