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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("CopyNumber450kData")
In most cases, you don't need to download the package archive at all.
CopyNumber450kData
Example data for the Illumina Methylation 450k array
Bioconductor version: 3.0
Data from 52 control samples from 450k methylation arrays
Author: Simon Papillon-Cavanagh, Jean-Philippe Fortin, Nicolas De Jay
Maintainer: Simon Papillon-Cavanagh <simon.papillon-cavanagh at mail.mcgill.ca>
Citation (from within R,
enter citation("CopyNumber450kData")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("CopyNumber450kData")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CopyNumber450kData")
| R Script | CopyNumber450kData User's Guide | |
| Reference Manual |
Details
| biocViews | DNAMethylation, ExperimentData |
| Version | 1.1.1 |
| License | Artistic-2.0 |
| Depends | R (>= 2.13.0), minfi, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19 |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | CopyNumber450k |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | CopyNumber450kData_1.1.1.tar.gz |
| Windows Binary | CopyNumber450kData_1.1.1.zip |
| Mac OS X 10.6 (Snow Leopard) | CopyNumber450kData_1.1.1.tgz |
| Mac OS X 10.9 (Mavericks) | CopyNumber450kData_1.1.1.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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