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biocLite("COSMIC.67")
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COSMIC.67
COSMIC.67
Bioconductor version: 3.0
COSMIC: Catalogue Of Somatic Mutations In Cancer, version 67 (2013-10-24)
Author: Julian Gehring
Maintainer: Julian Gehring <julian.gehring at embl.de>
Citation (from within R,
enter citation("COSMIC.67")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("COSMIC.67")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("COSMIC.67")
| R Script | COSMIC.67 - PDF | |
| Reference Manual |
Details
| biocViews | Cancer, ExperimentData |
| Version | 1.1.1 |
| License | GPL-3 |
| Depends | R (>= 3.0.2) |
| Imports | GenomicRanges, VariantAnnotation |
| LinkingTo | |
| Suggests | testthat, BiocStyle, knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | SomaticSignatures |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | COSMIC.67_1.1.1.tar.gz |
| Windows Binary | COSMIC.67_1.1.1.zip |
| Mac OS X 10.6 (Snow Leopard) | COSMIC.67_1.1.1.tgz |
| Mac OS X 10.9 (Mavericks) | COSMIC.67_1.1.1.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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