GSBenchMark-package |
A list of pathways and 11 datasets consisting gene expressions and phenotypes as the benchmark for Gene Set Analysis. Most of this information was used to validate Differential Rank Conservation (DIRAC) in the first place. In addition the data in the Eddy et al. (2010) paper, we also provide two datasets. |
bipolar_GDS2190 |
Gene expression matrix and a factor for binary phenotypes from DIRAC paper: Bipolar |
breast_GDS807 |
Gene expression matrix and a factor for binary phenotypes from DIRAC paper: Breast cancer |
diracpathways |
The pathways downloaded from DIRAC paper |
exprsdata |
Gene expression matrix from DIRAC paper |
GSBenchMark |
A list of pathways and 11 datasets consisting gene expressions and phenotypes as the benchmark for Gene Set Analysis. Most of this information was used to validate Differential Rank Conservation (DIRAC) in the first place. In addition the data in the Eddy et al. (2010) paper, we also provide two datasets. |
GSBenchMark.Dataset.names |
The names of the datasets of gene expressions and phenotypes downloaded from DIRAC paper |
GSBenchMarkDatasets |
The names of the datasets of gene expressions and phenotypes downloaded from DIRAC paper |
leukemia_GSEA |
Gene expression matrix and a factor for binary phenotypes from DIRAC paper: Leukaemia |
logexprsdata |
Gene expression matrix from DIRAC paper |
marfan_GDS2960 |
Gene expression matrix and a factor for binary phenotypes from DIRAC paper: Marfan |
melanoma_GDS2735 |
Gene expression matrix and a factor for binary phenotypes from DIRAC paper: Melanoma |
parkinsons_GDS2519 |
Gene expression matrix and a factor for binary phenotypes from DIRAC paper: Parkinson's |
phenotypes |
A factor for binary phenotypes from DIRAC paper |
phenotypesLevels |
A factor for binary phenotypes from DIRAC paper |
prostate_GDS2545_m_nf |
Gene expression matrix and a factor for binary phenotypes from DIRAC paper: Prostate |
prostate_GDS2545_m_p |
Gene expression matrix and a factor for binary phenotypes from DIRAC paper: Prostate |
prostate_GDS2545_p_nf |
Gene expression matrix and a factor for binary phenotypes from DIRAC paper: Prostate |
sarcoma_data |
Gene expression matrix and a factor for binary phenotypes from DIRAC paper: Sarcoma |
squamous_GDS2520 |
Gene expression matrix and a factor for binary phenotypes from DIRAC paper: Squamous (Head and Neck Cancer) |